Description

Uses evigene/scripts/prot/tr2aacds.pl to filter a transcript assembly

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

fasta:file

Transcript assembly in fasta format

*.{fsa,fa,fasta,fsa.gz,fa.gz,fasta.gz}

Output

name:type
description
pattern

dropset

meta:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

dropset:directory

Directory containing dropped transcripts and associated files

dropset

okayset

meta:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

okayset:directory

Directory containing included transcripts and associated files

okayset

versions

versions.yml:file

File containing software versions

versions.yml

Tools

evigene
Don Gilbert, gilbertd At indiana edu, 2018

EvidentialGene is a genome informatics project for "Evidence Directed Gene Construction for Eukaryotes", for constructing high quality, accurate gene sets for animals and plants (any eukaryotes), being developed by Don Gilbert at Indiana University, gilbertd at indiana edu.

http://arthropods.eugenes.org/EvidentialGene/evigene 10.7490/f1000research.1112594.1
included in
denovotranscript
maintainer
Github user GallVp
get in touch
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